Tools for Bringing Bioinformatics into Your Undergraduate Classrooms will be presented by Dr. Joanne Fox at the ASMCUE 2009 Conference in Fort Collins, Colorado. This online supplement will provide access to the teaching materials presented in this session. This toolkit consists of a set of hands-on bioinformatics “mini-labs” that we’ve been using in undergraduate classrooms for the past three years. These content modules are designed to give students hands-on guided tours of online bioinformatics tools. With subjects ranging from sequence searches to genome visualization, these materials have general appeal and are applicable to many different course settings. In this session, you will get a hands-on opportunity to try the bioinformatics “mini-labs” for yourself, access the supporting teaching materials, and understand approaches for introducing these modules into your own classrooms.
Access supporting teaching materials using the links found below:
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Mini Lab #1: NCBI’s Entrez This tutorial gives students a chance to practice advanced searching techniques using NCBI’s Entrez system.
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Background Lecture Slides
Mini Lab #2: BLAST Students follow a guided tour of BLAST, carry out a BLAST sequence similarity search and interpret the results.
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Background Lecture Notes
Follow Up Exercise – Jurassic Park
Mini Lab #3: Genome Browsers This tutorial introduces practical skills for navigating several different genome browsers (UCSC, MapViewer, Ensembl, and Artemis).
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Background Lecture Slides
Mini Lab #4: Multiple Sequence Alignments Students learn how to do their own multiple sequence alignments by downloading ClustalX.
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Background Lecture Slides
Questions? Please contact Dr. Joanne Fox, joanne@msl.ubc.ca, 604-827-3911
We gratefully acknowledge the funding for the development of these teaching materials provided by UBC students through the Teaching and Learning Enhancement Fund (TLEF) from 2005-2007.
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